The paper has a GitHub, the GitHub has a
README, the README has nothing:
Reproducibility Signals for Review Support
Federico Bolelli
⋆, B
, Davide Santoli
⋆
, Kevin Marchesini,
Luca Lumetti, and Costantino Grana
University of Modena and Reggio Emilia, Italy
{name.surname}@unimore.it
Abstract. Reproducibility policies promise “checkable” medical-imaging
science, yet many submissions still ship unverifiable artifacts. Our analy-
sis of 3 722 miccai papers shows code-linking rising from 51.8% (2021) to
72.5% (2025), but ∼13% of linked repositories are inaccessible or empty.
We present paper-snitch, a reviewer-facing decision-support tool that
turns these signals into an evidence-grounded report. paper-snitch pars-
es pdfs, resolves and sanity-checks repositories, and applies policy-aware
checklists aligned with miccai expectations, producing a review-time ver-
ifiability score decomposed into interpretable sub-scores plus criterion-
linked excerpts and artifacts reviewers can inspect. It never executes
untrusted code or attempts gpu-heavy reproduction, focusing instead
on bounded, verifiable checks. We compare paper-snitch on 100 ran-
domly sampled miccai 2025 papers with human annotators using shared
evaluation criteria, indicating that automated, bounded checks can scale
reproducibility screening while keeping final decisions with reviewers.
Keywords: Reproducibility Screening · Artifact Verification · Peer-review
Support Tools · paper-snitch
1 Introduction
Let us start by lowering your blood pressure: this paper does not introduce
a new transformer variant, a clever loss, or a “lightweight” architecture that
beats the state of the art (with a standard deviation, naturally, omitted for
space constraints). Instead, we focus on a less glamorous but increasingly urgent
problem for the miccai community: how to keep our science checkable when the
volume and complexity of scientific production are all accelerating at once.
The current wave of (medical imaging) submissions is shaped by two trends:
rapidly growing pipeline complexity and the widespread use of llm-based code
and text generation. While these tools can streamline engineering and documen-
tation, they also amplify risks—overconfident narratives around fragile exper-
iments, incomplete disclosure, and, in the worst case, low-quality manuscripts
⋆
Equal contribution. Authors are allowed to list their names first on their CVs.
B Corresponding author: federico.bolelli@unimore.it
2 F. Bolelli, D. Santoli, et al.
(a) Code availability in miccai proceedings (b) Findings
Fig. 1: (a) Analysis of 3 722 papers showing total publications (blue), papers
with code links (green), and papers with verified accessible code (red). Code
sharing has increased from 51.8% (2021) to 72.5% (2025), though ∼13% of linked
repositories remain inaccessible or empty. Overall, 65.5% provide links, only
54.1% have actual code (see Sec. 3.2). (b) Evidence-highlighted paper view with
criterion-linked excerpts.
that strain peer review [6,19]. Reviewers are asked to judge technical novelty,
clinical relevance, evaluation rigor, and ethical considerations under strict time
constraints, while reproducibility requirements add another axis of responsibility.
Reproducibility policies exist precisely to make this feasible. miccai provides
explicit guidance [18] on what should be made available to support reproducible
research (e.g., code, trained models where appropriate, documentation of data
and evaluation, and clear statements describing what is and is not released).
Other computer vision and pattern-recognition venues increasingly complement
such guidance with badges or artifact evaluation tracks [1,10] that recognize
verifiable releases and incentivize authors to produce them. The intent is clear:
shift the norm from “trust me” to “here is what you need to check.”
Yet, in practice, the weakest link is not the policy but the workflow (Fig. 1a):
many papers still provide no code, or promise a release “after acceptance” that
never materializes in the camera-ready [2,8]. Others provide a repository link
that is empty, private, missing critical components, or contains little more than
a placeholder README [3,13,24]. Even when artifacts are provided, a reviewer
cannot realistically execute arbitrary code, resolve dependencies, acquire datasets,
or reproduce gpu-heavy training. Consequently, compliance becomes difficult to
assess, and the boundary between “not verifiable within review constraints” and
“not sufficiently supported by provided artifacts” becomes blurred.
Crucially, a substantial part of this problem is mechanical and therefore
amenable to automation: many review-time questions are objective verifications
rather than scientific judgments. For example, does a linked repository exist and
contain runnable code beyond a stub? Is there an explicit license? Are environ-
ment specifications provided (e.g., requirements.txt, environment.yml)? Are
Reproducibility Signals for Review Support 3
pretrained weights and evaluation scripts available, and are paper claims trace-
able to concrete commands? Are data access instructions, splits, and evaluation
protocols clearly specified, and do the artifacts match the venue’s reproducibil-
ity statement? This motivates our central question: can we leverage modern
AI tooling to perform these bounded checks and present the results as decision
support—not an automated gatekeeper—in a transparent, evidence-grounded re-
port that highlights what is present, what is missing or unverifiable, and what
still requires human interpretation?
In this work, we introduce paper-snitch, a tool that supports review-time
screening of reproducibility signals for medical imaging submissions by combin-
ing lightweight repository inspection, structured text analysis of the manuscript,
and policy-aware checklists aligned with miccai’s stated expectations [18]. The
tool outputs (a) a review-time verifiability score (artifact completeness and con-
sistency) decomposed into interpretable sub-scores, and (b) a set of grounded
findings that can be inspected by the reviewer (Fig. 1b). The workflow is de-
signed to be scalable and to integrate into a venue review pipeline as an auxiliary
report, similar in spirit to artifact evaluation initiatives, but tailored to the time
and safety constraints of double-blind peer review. It does not establish end-to-
end reproducibility; it only checks what can be verified from provided artifacts
under review-time constraints.
We start from miccai because its scope makes reproducibility both essential
and challenging. Nonetheless, the approach is modular and can be adapted to
other (computer vision) venues with different policies or requirements [1,10].
If this already convinced the reader, the tool implementation is available on
GitHub,
1
while the live version is hosted at https://paper-snitch.unimore.it.
2
2 Related Work
Reproducible Research, Checklists, and Artifacts. Reproducible compu-
tational science increasingly treats the contribution as a research compendium—
paper, code, data (when shareable), and instructions to reproduce results [23].
Empirical studies report that many AI papers omit key details or artifacts
needed to reproduce findings [5]. In response, major venues have introduced
reproducibility checklists and artifact evaluation/badging to incentivize and sig-
nal verifiable releases [1,18,10,20,21]. However, verification remains costly and
inconsistent, especially under review-time constraints.
Reproducibility in Medical Imaging. Biomedical image analysis faces ad-
ditional barriers: restricted patient data, heterogeneous acquisition, and prepro-
cessing choices that can dominate outcomes. Reporting standards and commu-
nity guidance emphasize documenting data handling and evaluation protocols to
improve interpretability and reproducibility [16]. Similar issues arise in miccai-
style methodological work, where seemingly minor implementation differences
can substantially change results while remaining underreported.
1
https://github.com/AImageLab-zip/paper-snitch
2
paper-snitch makes use of paid services; unauthenticated users can only visualize.
4 F. Bolelli, D. Santoli, et al.
Fig. 2: End-to-end workflow of paper-snitch. Yellow nodes denote llm calls;
conditional branches are highlighted in red (diamonds and labels).
Automation for Review-time Screening. Recent discussions on generative
AI in peer review highlight both opportunities for scalable consistency checks
and risks around privacy, bias, and reliability [6,19]. Many reproducibility criteria
are largely verifiable (artifact presence, environment specs, runnable evaluation,
claim-to-command traceability) rather than requiring full re-execution. Our work
targets this verifiable surface layer with policy-aware, evidence-grounded reports
designed to support—not replace—human judgment.
3 Our Solution
3.1 Design Goals
paper-snitch is designed as decision support for review-time reproducibility
screening (artifact verifiability), not an automated acceptance filter. This fram-
ing drives three non-negotiable constraints: (i) evidence-grounded outputs, every
claim made by the tool must be traceable to an inspectable artifact (pdf text
span, repository file, or link), (ii) review-time safety, the system never executes
untrusted code and never attempts to reproduce gpu-heavy training runs. In-
stead, it performs static inspection, and (iii) scalability and auditability, the
workflow must handle many papers concurrently, support partial completion,
expose per-node failures, and preserve detailed intermediate artifacts so that
chairs or a dedicated reproducibility track can audit how scores were produced.
3.2 System Overview
Reproducibility screenings are operationalized through the workflow in Fig. 2.
The output is a compact report with decomposed scores and per-criterion evi-
dence snippets that a reviewer can inspect. Nodes are detailed as follows.
Paper Parsing. Given a pdf, we extract a structured representation (tei/xml)
of the manuscript using grobid [15], a machine learning library focused on
Reproducibility Signals for Review Support 5
technical and scientific publications. The result is stored as section-wise text
(and, when possible, figs./tabs. content and captions), so downstream steps can
reference evidence at the level of concrete spans rather than free-form summaries.
Paper Classification. In parallel, we classify each paper as introducing a new
dataset, proposing a new method, addressing both (dataset & method), or being
purely theoretical, i.e., not requiring any code. This categorization is performed
by a llm and leverages the full content of the paper. This label has two explicit
effects in the workflow: it determines which branches are applicable (e.g., pure
theoretical papers can skip code analysis checks), and it selects the weighting
used to compute the final score, which depends on the paper’s category. What
constitutes missing reproducibility information is contribution-dependent: the
system should avoid penalizing inapplicable items.
Section Embedding. The manuscript is indexed for evidence retrieval [9]. All
extracted sections are split into short, overlapping spans (2k characters with
20% overlap). Each span is embedded with a dense encoder and stored in a
reusable vector index [12]. The rationale for this approach is twofold: criterion-
level retrieval is cheaper and typically more stable than passing the entire paper
to an llm; chunking supports evidence localization and mitigates failures where
information is missed or diluted in long inputs [14].
Paper Analysis. This branch implements the “paper-side” reproducibility check-
list. Following [18], it evaluates 20 criteria grouped into three categories: models,
datasets, and experiments. Each criterion has a precomputed embedding built
from its name, detailed description, and examples. At runtime, for criterion
embedding u and a section chunk embedding v, we compute cosine similarity
sim(u, v) =
u·v
∥u∥∥v ∥
and retrieve the top-k most similar chunks, with a conser-
vative similarity threshold and a token budget scheme. An llm then evaluates
one criterion at a time using only (a) the criterion definition and (b) the re-
trieved text spans, returning a structured record: presence p ∈ {0, 1}, confidence
c ∈ [0, 1], and quoted evidence/notes (i.e., what makes the llm give that score
with the corresponding confidence). Category scores are computed determin-
istically as S
g
= 100 ·
1
|I
g
|
P
i∈I
g
(p
i
c
i
), where p
i
and c
i
are respectively the
present/absent decision and confidence for criterion i, and I
g
is the set of crite-
ria composing the category g. Finally, we combine category scores using paper-
type-specific weights to obtain a paper-side score S
paper
. Criterion-first evalua-
tion yields interpretable failure modes (“missing split description” vs. “missing
license”), enables per-criterion auditing, and keeps scoring stable: llms extract
evidence; arithmetic is deterministic. The confidence is used to tune the score,
assuming that lower values indicate a less clear presence.
Code Availability. This node gates the code branch. From the manuscript, we
resolve repository links and perform lightweight sanity checks (reachable, non-
empty, not a placeholder). If the code link is not available in the pdf, an online
search might be performed depending on conference policies. Both operations,
sanity check and online search, are supported by llms. If code is unavailable, the
workflow marks the code branch as skipped and proceeds without it. Fig. 1a is
generated from this node output.
6 F. Bolelli, D. Santoli, et al.
Code Embeddings. When code is available, a searchable repository index is
built in two passes to stay within a fixed token budget while preserving repro-
ducibility-critical content. First, we ingest only the repository readme(s) plus
the full repository tree structure, including file sizes. We then ask an llm to
output an ordered list of include patterns (budgeted, e.g., ≤100k tokens to-
tal), prioritizing documentation, dependency specs (e.g., requirements.txt,
environment.yml), and training/evaluation entry points, while excluding pe-
ripheral scripts (visualizations, extra baselines, benchmarks). Finally, we re-
ingest only the selected files:
3
each file is chunked at word boundaries into
non-overlapping ∼20k-character blocks and embeddings are computed. Chunks
are stored with explicit positional metadata, i.e., file_path, chunk_index, to-
tal_chunks, to support evidence linking and retrieval-style lookups in down-
stream analysis. For integrity and cache invalidation, we compute and persist a
per-file SHA-256 digest so reruns can detect code changes. Ingestion is guided by
GitIngest [4]. We acknowledge that llm-driven file selection may be fragile, and
recommend venue-level guidelines that mandate clear, standardized repository
entry points.
Code Analysis. During this step, the repository snapshot, the embedded code
chunks, and paper spans produced by previous nodes are consumed. The analysis
is decomposed into six components (a superset of miccai’s code-oriented expec-
tations [18]): (i) research methodology detection (e.g., deep learning, machine
learning, algorithm, simulation, data analysis) together with applicability flags
(e.g., requires training, requires datasets); (ii) repository structure and depen-
dency specification quality; (iii) code components (e.g., training code, evaluation
code, documented commands); (iv) released artifacts (e.g., checkpoints, dataset
links, and coverage estimates); (v) dataset split specification and random seeds;
(vi) documentation (e.g., readme, reproduction commands).
4
Each component is analyzed by a separate, targeted llm call with structured
output. Critically, the llm input is jointly grounded in repo evidence and paper
claims: for each component we assemble (a) the repository summary and file
tree, (b) the most relevant embedded code/documentation chunks (taken from
Code Embeddings), and (c) the corresponding paper spans (taken from Section
Embedding), so the model can leverage both data sources and flag mismatches
between manuscript and repository rather than implicitly assuming consistency.
Both (b) and (c) are retrieved by cosine similarity against a component-specific
query, similarly to what is described in the Paper Analysis node.
Numeric scoring is fully deterministic. Given component outputs, we compute a
raw breakdown over (ii)—(vi) scoring axes with methodology-adaptive maxima
(e.g., max code-completeness is 3.0 if training is required, else 2.5; artifacts
are weighted up to 2.5 when datasets/training are required, else 2.0; splits are
weighted up to 2.0 only when splits are required). The overall score is then
normalized as S
code
= 100·
P
j
b
j
/
P
j
m
j
, where b
j
is the achieved score on axis j
3
The system is configured to always include critical filenames (e.g., eval.*, train.*).
4
Components (ii)–(vi) are methodology-dependent: (i) determines applicability, ex-
pected evidence, and thus the relative importance of each component in scoring.
Reproducibility Signals for Review Support 7
and m
j
its maximum score under the detected methodology; per-axis normalized
scores 100 · b
j
/m
j
are also reported in output. Finally, recommendations are
generated programmatically from missing flags (e.g., missing checkpoints when
requires training is true), ensuring actionable feedback without relying on the
llm for arithmetic or policy logic.
Dataset Analysis. If the classification indicates a dataset contribution (e.g.,
the paper explicitly claims a new dataset), we run a dedicated dataset documen-
tation checklist (10 criteria derived from [18]) using the same retrieval-based,
structured-evaluation pattern as Paper Analysis, yielding S
data
. Indeed, dataset
papers have additional reproducibility obligations (collection protocol, annota-
tion, access restrictions, ethical statements) that are orthogonal to “method”
reproducibility and should be assessed explicitly.
Final Aggregation. Although intermediate scores are always reported, the
final report merges criterion-level outputs from Paper Analysis, Code Analysis (if
available), and Dataset Analysis (if applicable) into a single “evaluation details”
artifact, stored for audit and human comparison. The overall score is a weighted
average with paper-type-dependent weights (e.g., methodological papers might
use S
final
= 0.6S
paper
+0.4S
code
). Such weights should reflect a pragmatic review
rationale and should be adapted to each conference.
During the aggregation stage, llm is used only to generate a short qualita-
tive synthesis (strengths/weaknesses) from already-computed results; it does not
generate or adjust numeric scores. The final output includes overall and com-
ponent scores, a concise narrative summary, a machine-readable json artifact
with criterion-level decisions and evidence, and an interactive paper view with
highlighted supporting spans (Fig. 1b).
3.3 Infrastructure
Operationally, paper-snitch is deployed as a containerized web service via
Docker, so the full pipeline (web ui, workflow workers, parsers, and databases)
can be brought up reproducibly with pinned images and isolated dependencies.
An nginx reverse proxy serves static assets, forwarding api traffic to a Django
application. Long-running analyses are executed by a pool of Celery workers.
The analysis logic itself is expressed as a versioned graph in LangGraph (State-
Graph) [11], compiled and executed inside Celery tasks.
4 Performance in the Field
We evaluate paper-snitch on N=100 randomly sampled papers from the mic-
cai 2025 proceedings, stratified over the three main categories identified in the
Paper Classification node (Sec. 3.2): dataset, method, and both.
For each paper, we run the full workflow twice, swapping only the llm used
in all generation steps: GPT-4o [7] and GPT-5 [22]. Embedding models, i.e.,
text-embedding-3-small with a fixed embedding size of 1 536, and determin-
istic scoring code are kept fixed across runs to isolate the effect of the llm.
8 F. Bolelli, D. Santoli, et al.
Table 1: Human-machine agreement and I/O k-token usage per analysis axis.
Analysis
Category
GPT-4o GPT-5
% Agr. MCC
#IN #OUT
% Agr. MCC
#IN #OUT
Code 90.70 0.81 95.37 1.33 84.80 0.68 126.75 2.65
Paper 77.54 0.57 37.91 2.81 66.28 0.38 37.91 5.78
Dataset 72.22 0.29 13.39 0.99 65.00 0.18 13.39 1.71
Global 80.40 0.60 78.80 3.51 70.89 0.43 78.80 7.98
Whenever configurable, structured-output calls use low temperatures (0.1–0.2)
for near-deterministic decoding in criterion-level analyses, while synthesis tasks
use slightly higher values (0.3) to improve readability. Additionally, given the
miccai paper length, we set the retrieval depth to k=3 to ground the llm deci-
sion to a concise shortlist of evidence spans.
Human Reference Scores. We compare automated scores with human judg-
ments from two annotators with more than 3 years of experience. Annotators
filled the same criterion/component rubrics exposed by the tool (20 paper crite-
ria, 10 dataset criteria, and the code-component checklist) and evaluated sepa-
rate paper batches, discussing ambiguous cases to reach consensus before final-
izing the rubric scores. In Tab. 1, the agreement between automated and human
labels is computed by treating each field as a binary decision (true/false). Agree-
ment is computed independently for each of the three main analysis components
(paper, dataset, and code) and also overall (pooling all fields across components):
we report percent agreement (accuracy), defined as the fraction of fields where
the automated label matches the human label, and Matthews Correlation Co-
efficient (mcc) [17]. In our randomly sampled pool of 100 papers, paper-type
classification was always correct. Tab. 1 also reports average token usage. The
cost per paper averages $0.23 for GPT-4o and $0.43 for GPT-5.
5 Discussion and Conclusion
This paper presents paper-snitch as a practical proof-of-concept for evidence-
grounded reproducibility screening in medical imaging submissions. The sys-
tem decomposes reproducibility into interpretable criteria, ties decisions to in-
spectable evidence, and produces auditable artifacts that can support human
judgment. We emphasize that weighting choices, criteria, and thresholds should
be tuned to each venue’s policies and validated before high-stakes deployment.
Limitations. Our evaluation uses a simple binary scheme, which may not cap-
ture partial releases, restricted-access data, or underspecified settings; future
work should evaluate richer schemes against expert judgments and reproducibil-
ity outcomes. The system also ingests untrusted text (e.g., readme) and re-
lies on llm-guided indexing, making it susceptible to prompt-injection; mitiga-
tions already include schema-constrained outputs and deterministic cross-checks
Reproducibility Signals for Review Support 9
against the repository tree. Finally, while llm costs are non-trivial, they ap-
pear feasible at conference scale and can be reduced via batching/caching or
on-premises/open-weight models when privacy or budget requires it.
Acknowledgments. This project has received funding from Fondazione di Mod-
ena, through the FAR 2024 (E93C24002080007), and from MUR, under the NRRP
“Fit4MedRob-Fit for Medical Robotics” (PNC0000007).
Disclosure of Interests. The authors have no competing interests to declare that
are relevant to the content of this article.
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